PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546079.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 268aa    MW: 30097.8 Da    PI: 6.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.9e-1578130155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r+ h  +Er+RR+++ s f +Lr+llP       ++K s ++ + +Av+YIk+Lq
  XP_010546079.1  78 KRMRHRDVERQRRQEVSSLFKNLRSLLPLqY---VKGKRSSSDLVSEAVDYIKDLQ 130
                     799**************************66...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1477143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-1277134No hitNo description
PROSITE profilePS5088814.68477129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1378145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-1278130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-783135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDYVPSLDLI SSFFTPDLIE QDGFGFEFPD PTSVPSKLIS FRNSDISDRN TDSKDDRKRK  60
GDEISGREVE GSDERLKKRM RHRDVERQRR QEVSSLFKNL RSLLPLQYVK GKRSSSDLVS  120
EAVDYIKDLQ KRIKEFDEKK DQIKKISDGE NRASGSAAPS STEACSSSPS SSSSSCSCGG  180
EGKDIEVVIM PCLGGGVEIV ISCCFRHEFC LSSVLQVLVE EEGFNVFRCT SATLQSSRRL  240
LHNIFAQVDG GRNINFAELQ DKIMRTRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17789KRMRHRDVERQRR
27889RMRHRDVERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546079.10.0PREDICTED: transcription factor bHLH125
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.13e-61bHLH family protein